PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0218
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 474aa    MW: 53155.7 Da    PI: 7.962
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0218genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17145194155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gh_D03G0218 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194
                  78*******************......55************************997 PP

2AP243.95.8e-14237287155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Gh_D03G0218 237 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 287
                  89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-9145194IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16145203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-17146202IPR001471AP2/ERF domain
SMARTSM003807.5E-32146208IPR001471AP2/ERF domain
CDDcd000182.95E-11146201No hitNo description
PROSITE profilePS5103217.701146202IPR001471AP2/ERF domain
CDDcd000182.52E-25237297No hitNo description
SuperFamilySSF541713.92E-17237297IPR016177DNA-binding domain
PfamPF008471.2E-9237287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-16238295IPR001471AP2/ERF domain
SMARTSM003802.1E-31238301IPR001471AP2/ERF domain
PROSITE profilePS5103215.659238295IPR001471AP2/ERF domain
PRINTSPR003675.5E-6239250IPR001471AP2/ERF domain
PRINTSPR003675.5E-6277297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MWDLNDSPDR SRGEESEGCS SPVDGEEGKG KRVGSVSNSS SSAVVIEDGS EEEDAAALKK  60
RNSNMIFGFS VPVESGGPAP VTRQFFPLDQ DPEMRAVPTG TAQGFPMAHW VGVKFRQSEP  120
LAVAKSVEAT NPMKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA  180
AARAYDRAAI KFRGVEADIN FSIEDYEEDL KQMSNLTKEE FVHVLRRQST GFPRGSSKYR  240
GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIEAARAYDK AAIKCNGKDA VTNFDPSIYD  300
NELHNGETSS CNGRDHNLDL SLGNSTSKQN NLEFGGVDKQ NAMVDQHSWG YRSKQNLQQG  360
PWGNDDTMQL LNQTQIQYSQ ASIKSIGQRN RPTDNHTFNI HPPHFNPYRI HYPSNNNNGV  420
QIGSDLSLST NDHHHQQWQS TGSHQLCLQM VQHHQDSHGR LDLPKLRKMG STHS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.82340.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9640641e-140JX964064.1 Gossypium hirsutum clone NBRI_TRANS-333 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469564.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X1
SwissprotP479271e-131AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0D2QMA70.0A0A0D2QMA7_G
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-123AP2 family protein